Question: Subsetting a fasta file using seqinr in R
library("seqinr")
This is a tutorial for using the R package AnnotationBustR. AnnotationBustR reads in sequences from GenBank and allows you to quickly extract specific parts and write them to FASTA files given a set of search terms. This is useful as it allows users to quickly extract parts of concatenated or genomic sequences based on GenBank features and write them to FASTA files, even when feature annotations for homologous loci may vary (i.e. gene synonyms like COI, COX1, COXI all being used for cytochrome oxidase subunit 1).
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原创声明:本文系作者授权腾讯云开发者社区发表,未经许可,不得转载。
如有侵权,请联系 cloudcommunity@tencent.com 删除。