下载文件一定要md5校验一下

生信技能树

发布于 2018-09-21 16:34:01

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发布于 2018-09-21 16:34:01

因为要使用STAR-fusion软件，其GitHub主页里面提到了配置好的数据库文件，我就想直接下载，如下：

├── [ 26G]  GRCh37_gencode_v19_CTAT_lib_Nov012017.plug-n-play.tar.gz
├── [ 20G]  GRCh38_gencode_v26_CTAT_lib_Nov012017.plug-n-play.tar.gz
├── [ 21G]  Mouse_M15_CTAT_lib_Nov012017.plug-n-play.tar.gz

看起来大小差不多，我以为下载完毕，结构解压的时候发现

tar xxvf Mouse_M15_CTAT_lib_Nov012017.plug-n-play.tar.gz
Mouse_M15_CTAT_lib_Nov012017/
Mouse_M15_CTAT_lib_Nov012017/ctat_genome_lib_build_dir/
Mouse_M15_CTAT_lib_Nov012017/ctat_genome_lib_build_dir/ref_genome.fa
Mouse_M15_CTAT_lib_Nov012017/ctat_genome_lib_build_dir/pfam_domains.dbm 

gzip: stdin: unexpected end of file
tar: Unexpected EOF in archive
tar: Unexpected EOF in archive
tar: Error is not recoverable: exiting now

这个时候才想到去下载日志里面看看，原来是下载失败了。

22023800K .......... .......... .......... .......... .......... 88% 17.2K 5h5m
22023850K .......... .......... ..                               88%  126K=9m26s

2018-01-07 23:41:09 (157 KB/s) - Connection closed at byte 22552444928. Retrying.

--2018-01-07 23:41:19--  (try:12)  https://data.broadinstitute.org/Trinity/CTAT_RESOURCE_LIB/Mouse_M15_CTAT_lib_Nov012017.plug-n-play.tar.gz
Connecting to data.broadinstitute.org|69.173.92.29|:443... connected.
HTTP request sent, awaiting response... 404 Not Found
2018-01-07 23:41:38 ERROR 404: Not Found.

所以我检查了md5确认了一下，然后断点续下。

wget -c https://data.broadinstitute.org/Trinity/CTAT_RESOURCE_LIB/Mouse_M15_CTAT_lib_Nov012017.plug-n-play.tar.gz
--2018-01-09 10:58:23--  https://data.broadinstitute.org/Trinity/CTAT_RESOURCE_LIB/Mouse_M15_CTAT_lib_Nov012017.plug-n-play.tar.gz
Resolving data.broadinstitute.org... 69.173.92.29
Connecting to data.broadinstitute.org|69.173.92.29|:443... connected.
HTTP request sent, awaiting response... 206 Partial Content
Length: 25502123410 (24G), 2949678482 (2.7G) remaining [application/x-gzip]
Saving to: “Mouse_M15_CTAT_lib_Nov012017.plug-n-play.tar.gz”

88% [+++++++++++++++++++++++++++

虽然解决问题了，但是因为当初没有进行md5校验，导致后来的流程报错，浪费了几天时间。

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原始发表：2018-09-11，如有侵权请联系 cloudcommunity@tencent.com 删除

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