TCGA数据库中癌症名称缩写
TCGA（The Cancer Genome Atlas, 癌症基因组图谱，https://portal.gdc.cancer.gov/）是美国国家癌症研究所(National Cancer Institute)和美国人类基因组研究所(National Human Genome Research Institute)共同监督的一个项目，旨在应用高通量的基因组分析技术，以帮助人们对癌症有个更好的认知，从而提高对于癌症的预防、诊断和治疗能力。
截止2020年1月13日，TCGA里面一共收录了63个癌症相关项目，那么有人不禁要问了，如何获取这63个癌症项目的具体项目编号和名称。今天我们就来聊一聊。
上图就是从TCGA官网截取的，显示目前一共有63个项目。可以点击箭头所指的Projects，获取具体63个癌症项目的名称，如下图所示。
除了从官网直接下载以外，我们也可以用R代码来获取。用到的还是我们前面用来获取临床信息的那个R包，TCGAbiolinks。TCGAbiolinks获取癌症临床信息
if (!requireNamespace("BiocManager", quietly=TRUE)){
install.packages("BiocManager")
}
BiocManager::install("TCGAbiolinks")
library(TCGAbiolinks)
projects=getGDCprojects()
write.csv(file="projects.csv",cbind(projects[8:9]),row.names=F)通过这段代码，我们可以将获取到63个项目的信息，保存到本地的projects.csv这个文件中，然后用Excel打开查看。具体信息如下：
id | name | 翻译 |
|---|---|---|
TCGA-SARC | Sarcoma | 肉瘤 |
TARGET-CCSK | Clear Cell Sarcoma of the Kidney | 肾脏的透明细胞肉瘤 |
TARGET-NBL | Neuroblastoma | 神经母细胞瘤 |
TARGET-AML | Acute Myeloid Leukemia | 急性髓性白血病 |
TCGA-MESO | Mesothelioma | 间皮瘤 |
TCGA-ACC | Adrenocortical Carcinoma | 肾上腺皮质癌 |
TCGA-READ | Rectum Adenocarcinoma | 直肠腺癌 |
TCGA-LGG | Brain Lower Grade Glioma | 脑低级脑胶质瘤 |
BEATAML1.0-CRENOLANIB | Clinical Resistance to Crenolanib in Acute Myeloid Leukemia Due to Diverse Molecular Mechanisms | 不同分子机制对急性髓细胞性白血病克诺拉尼的临床耐药性 |
TCGA-THCA | Thyroid Carcinoma | 甲状腺癌 |
VAREPOP-APOLLO | VA Research Precision Oncology Program | VA研究精密肿瘤学计划 |
HCMI-CMDC | NCI Cancer Model Development for the Human Cancer Model Initiative | 针对人类癌症模型计划的NCI癌症模型开发 |
TCGA-CHOL | Cholangiocarcinoma | 胆管癌 |
TCGA-KIRC | Kidney Renal Clear Cell Carcinoma | 肾肾透明细胞癌 |
ORGANOID-PANCREATIC | Pancreas Cancer Organoid Profiling | 胰腺癌类器官分析 |
TCGA-BRCA | Breast Invasive Carcinoma | 乳腺浸润癌 |
TCGA-OV | Ovarian Serous Cystadenocarcinoma | 卵巢浆液性膀胱腺癌 |
TCGA-GBM | Glioblastoma Multiforme | 胶质母细胞瘤 |
TCGA-SKCM | Skin Cutaneous Melanoma | 皮肤皮肤黑色素瘤 |
GENIE-VICC | AACR Project GENIE - Contributed by Vanderbilt-Ingram Cancer Center | AACR GENIE项目-由范德比尔特-英格拉姆癌症中心提供 |
TCGA-DLBC | Lymphoid Neoplasm Diffuse Large B-cell Lymphoma | 淋巴样肿瘤弥漫性大B细胞淋巴瘤 |
CGCI-BLGSP | Burkitt Lymphoma Genome Sequencing Project | Burkitt淋巴瘤基因组测序项目 |
OHSU-CNL | Philadelphia-Negative Neutrophilic Leukemias (CNL/aCML/MDS/MPNu) | 费城阴性嗜中性粒细胞白血病（CNL / aCML / MDS / MPNu） |
CPTAC-3 | ||
BEATAML1.0-COHORT | Functional Genomic Landscape of Acute Myeloid Leukemia | 急性髓性白血病的功能基因组景观 |
TCGA-KICH | Kidney Chromophobe | 肾染色体 |
TCGA-UVM | Uveal Melanoma | 葡萄膜黑色素瘤 |
TCGA-THYM | Thymoma | 胸腺瘤 |
TCGA-TGCT | Testicular Germ Cell Tumors | 睾丸生殖细胞肿瘤 |
TCGA-LUSC | Lung Squamous Cell Carcinoma | 肺鳞状细胞癌 |
TCGA-PRAD | Prostate Adenocarcinoma | 前列腺腺癌 |
FM-AD | Foundation Medicine Adult Cancer Clinical Dataset (FM-AD) | 基础医学成人癌症临床数据集（FM-AD） |
TCGA-UCEC | Uterine Corpus Endometrial Carcinoma | 子宫体子宫内膜癌 |
TCGA-LAML | Acute Myeloid Leukemia | 急性髓性白血病 |
TARGET-ALL-P2 | Acute Lymphoblastic Leukemia - Phase II | 急性淋巴细胞白血病-第二阶段 |
TCGA-STAD | Stomach Adenocarcinoma | 胃腺癌 |
TARGET-ALL-P3 | Acute Lymphoblastic Leukemia - Phase III | 急性淋巴细胞白血病-第三阶段 |
GENIE-DFCI | AACR Project GENIE - Contributed by Dana-Farber Cancer Institute | AACR项目GENIE-由Dana-Farber癌症研究所贡献 |
GENIE-NKI | AACR Project GENIE - Contributed by Netherlands Cancer Institute | AACR GENIE项目-由荷兰癌症研究所贡献 |
GENIE-MDA | AACR Project GENIE - Contributed by MD Anderson Cancer Center | AACR GENIE项目-由MD安德森癌症中心提供 |
GENIE-JHU | AACR Project GENIE - Contributed by Johns Hopkins Sidney Kimmel Comprehensive Cancer Center | AACR项目GENIE-由Johns Hopkins Sidney Kimmel综合癌症中心提供 |
GENIE-MSK | AACR Project GENIE - Contributed by Memorial Sloan Kettering Cancer Center | AACR GENIE项目-由纪念斯隆·凯特琳癌症中心提供 |
TCGA-ESCA | Esophageal Carcinoma | 食道癌 |
TCGA-HNSC | Head and Neck Squamous Cell Carcinoma | 头颈部鳞状细胞癌 |
TARGET-OS | Osteosarcoma | 骨肉瘤 |
TARGET-RT | Rhabdoid Tumor | 横纹肌瘤 |
TCGA-LIHC | Liver Hepatocellular Carcinoma | 肝肝细胞癌 |
CTSP-DLBCL1 | CTSP Diffuse Large B-Cell Lymphoma (DLBCL) CALGB 50303 | CTSP弥漫性大型B细胞淋巴瘤（DLBCL）CALGB 50303 |
TCGA-COAD | Colon Adenocarcinoma | 结肠腺癌 |
TCGA-LUAD | Lung Adenocarcinoma | 肺腺癌 |
TCGA-CESC | Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma | 宫颈鳞状细胞癌和宫颈内腺癌 |
TARGET-WT | High-Risk Wilms Tumor | 高危威尔姆斯肿瘤 |
NCICCR-DLBCL | Genomic Variation in Diffuse Large B Cell Lymphomas | 弥漫性大B细胞淋巴瘤的基因组变异 |
TCGA-PAAD | Pancreatic Adenocarcinoma | 胰腺腺癌 |
MMRF-COMMPASS | Multiple Myeloma CoMMpass Study | 多发性骨髓瘤CoMMpass研究 |
TARGET-ALL-P1 | Acute Lymphoblastic Leukemia - Phase I | 急性淋巴细胞白血病-I期 |
CPTAC-2 | ||
TCGA-UCS | Uterine Carcinosarcoma | 子宫癌肉瘤 |
TCGA-KIRP | Kidney Renal Papillary Cell Carcinoma | 肾肾乳头状细胞癌 |
TCGA-PCPG | Pheochromocytoma and Paraganglioma | 嗜铬细胞瘤和副神经节瘤 |
TCGA-BLCA | Bladder Urothelial Carcinoma | 膀胱尿路上皮癌 |
GENIE-UHN | AACR Project GENIE - Contributed by Princess Margaret Cancer Centre | AACR GENIE项目-由玛格丽特公主癌症中心提供 |
GENIE-GRCC | AACR Project GENIE - Contributed by Institut Gustave Roussy | AACR GENIE项目-由Institut Gustave Roussy贡献 |
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