libgomp.so.1: version `GOMP_4.0' not found 或者libstdc++.so.6: version `CXXABI_1.3.8' not found 错误解决

白墨石

发布于 2021-01-13 11:20:30

1.3K0

发布于 2021-01-13 11:20:30

文章被收录于专栏：生信情报站

报错

/root/miniconda3/envs/chipseq/lib/R/bin/exec/R: /root/miniconda3/envs/chipseq/lib/R/bin/exec/../../lib/../../libgomp.so.1: version `GOMP_4.0' not found (required by /root/miniconda3/envs/chipseq/lib/R/bin/exec/../../lib/libR.so)
/root/miniconda3/envs/chipseq/lib/R/bin/exec/R: /root/miniconda3/envs/chipseq/lib/R/bin/exec/../../lib/../.././libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /root/miniconda3/envs/chipseq/lib/R/bin/exec/../../lib/../../libicuuc.so.58)
/root/miniconda3/envs/chipseq/lib/R/bin/exec/R: /root/miniconda3/envs/chipseq/lib/R/bin/exec/../../lib/../.././libstdc++.so.6: version `CXXABI_1.3.9' not found (required by /root/miniconda3/envs/chipseq/lib/R/bin/exec/../../lib/../../libicuuc.so.58)
/root/miniconda3/envs/chipseq/lib/R/bin/exec/R: /root/miniconda3/envs/chipseq/lib/R/bin/exec/../../lib/../.././libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /root/miniconda3/envs/chipseq/lib/R/bin/exec/../../lib/../../libicui18n.so.58)
/root/miniconda3/envs/chipseq/lib/R/bin/exec/R: /root/miniconda3/envs/chipseq/lib/R/bin/exec/../../lib/../.././libstdc++.so.6: version `CXXABI_1.3.9' not found (required by /root/miniconda3/envs/chipseq/lib/R/bin/exec/../../lib/../../libicui18n.so.58)

解决

cd /root/miniconda3/envs/chipseq/lib/R/bin/exec/../../lib/../.././
ls -al | grep libstdc -rw-rw-r-- 3 root root 2943678 11月 15 2016 libstdc++.a lrwxrwxrwx 1 root root 19 6月 24 16:50 libstdc++.so -> libstdc++.so.6.0.19 lrwxrwxrwx 1 root root 19 6月 24 16:50 libstdc++.so.6 -> libstdc++.so.6.0.19 -rwxrwxr-x 3 root root 1055192 11月 15 2016 libstdc++.so.6.0.19 -rw-rw-r-- 1 root root 2349 6月 24 16:50 libstdc++.so.6.0.19-gdb.py lrwxrwxrwx 1 root root 19 6月 24 16:50 libstdc++.so.6.0.21 -> libstdc++.so.6.0.24 -rwxrwxr-x 2 root root 9536208 8月 17 2018 libstdc++.so.6.0.25
可以看到 libstdc++.so.6 -> libstdc++.so.6.0.19 还是指向旧的gcc库文件，所以修改软链
rm -rf libstdc++.so.6
ln -s libstdc++.so.6 libstdc++.so.6.0.25
测试是否可以进入R

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原始发表：2019/06/25 ，如有侵权请联系 cloudcommunity@tencent.com 删除

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libgomp.so.1: version `GOMP_4.0' not found 或者libstdc++.so.6: version `CXXABI_1.3.8' not found 错误解决

libgomp.so.1: version `GOMP_4.0' not found 或者libstdc++.so.6: version `CXXABI_1.3.8' not found 错误解决

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