R语言环境搭建

(base) [root@mgt ~]# yum search R | grep "^R"
R.x86_64 : A language for data analysis and graphics
R-4.1.1.x86_64 : GNU R statistical computation and graphics system
R-RInside.x86_64 : C++ Classes to Embed R in C++ (and C) Applications
R-RInside-devel.x86_64 : RInside Development Files
R-RInside-examples.x86_64 : RInside Examples
R-RUnit.noarch : R Unit test framework
R-Rcpp.x86_64 : Seamless R and C++ Integration
R-Rcpp-devel.x86_64 : Rcpp Development Files
R-Rcpp-examples.x86_64 : Rcpp Examples
R-core.x86_64 : The minimal R components necessary for a functional runtime
R-core-devel.x86_64 : Core files for development of R packages (no Java)
R-devel.x86_64 : Full R development environment metapackage
R-highlight.x86_64 : R Syntax Highlighter
R-inline.noarch : Functions to Inline C, C++, Fortran Function Calls from R
R-java.x86_64 : R with Fedora provided Java Runtime Environment
R-java-devel.x86_64 : Development package for use with Java enabled R components
R-littler.x86_64 : littler: R at the Command-Line via 'r'
R-littler-examples.x86_64 : R-littler Examples
R-qtl.x86_64 : Tools for analyzing QTL experiments
R-rlecuyer.x86_64 : R interface to RNG with multiple streams
R2spec.noarch : Python script to generate R spec file
RBTools.noarch : Tools for use with ReviewBoard
RabbIT.noarch : Proxy for a faster web
RackTables.noarch : A data-center asset management system
RdRand.x86_64 : Library for generating random numbers using the RdRand
RdRand-devel.x86_64 : Development files for the RdRand
ReviewBoard.noarch : Web-based code review tool

#查看 R 版本
yum info R.x86_64

#利用 bioconda 安装 R
mamba install -y r-base

#下载
wget https://cloud.r-project.org/src/base/R-4/R-4.2.1.tar.gz
tar -zxvf R-4.2.1.tar.gz
cd R-4.2.1
#检测配置
./configure 
#编译
make
make install

mv /usr/bin/R /usr/bin/R.bak #将系统3.6.0的R备份
ln -s /share/Software/biosoft/R-4.2.1/bin/R /usr/bin/R #软连接新的4.2.1
[root@mgt R-4.2.1]# ll /usr/bin/R
lrwxrwxrwx 1 root root 37 Jul  6 16:49 /usr/bin/R -> /share/Software/biosoft/R-4.2.1/bin/R

export R_VERSION=4.2.1
curl -O https://cdn.rstudio.com/r/centos-7/pkgs/R-${R_VERSION}-1-1.x86_64.rpm
sudo yum install R-${R_VERSION}-1-1.x86_64.rpm
mv /usr/local/bin/R /usr/local/bin/R.bak
mv /usr/local/bin/Rscript /usr/local/bin/Rscript.bak
sudo ln -s /opt/R/${R_VERSION}/bin/R /usr/local/bin/R
sudo ln -s /opt/R/${R_VERSION}/bin/Rscript /usr/local/bin/Rscript

#安装rstudio-server
wget https://download2.rstudio.org/server/centos8/x86_64/rstudio-server-rhel-2021.09.2-382-x86_64.rpm
yum install rstudio-server-rhel-2021.09.2-382-x86_64.rpm

#检查是否安装成功
rstudio-server verify-installation
rstudio-server status

#修改rstudio-server配置，配置R版本的地址，前面我们软链接了，所以省去这一步
# vim /etc/rstudio/rserver.conf
# Server Configuration File
#rsession-which-r=/usr/local/bin/R

systemctl start rstudio-server.service
systemctl enable rstudio-server.service
systemctl status rstudio-server
firewall-cmd --permanent --add-port=8787/tcp
firewall-cmd --permanent --add-port=8787/udp
firewall-cmd --reload

.libPaths(c("/opt/R/4.2.1/lib/R/library"))#查看R包库位置
"/home/xhs/R/x86_64-pc-linux-gnu-library/4.1" "/opt/R/4.2.1/lib/R/library"
#上面有两个，我们想安装到第二个路径中
#先在命令行给到目录修改权限、doc为包的介绍html存放目录也需要权限
sudo chmod -R 777 /opt/R/4.2.1/lib/R/library
sudo chmod -R 777 /opt/R/4.2.1/lib/R/doc
#/home/xhs/Rpack/download创建，用于存放下载的R包
R中安装命令
install.packages('ggplot2',lib = "/opt/R/4.2.1/lib/R/library",destdir = '/home/xhs/Rpack/download')

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