老师您好,
我跑到sc.tl.rank_genes_groups(adata, 'leiden', method='logreg')这句的时候总是出错,错误提示:
ranking genes
C:\Users\81085\PycharmProjects\Brean_Sparta_scRNA_sequencing\venv\lib\site-packages\sklearn\linear_model\_logistic.py:818: ConvergenceWarning: lbfgs failed to converge (status=1):
STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.
Increase the number of iterations (max_iter) or scale the data as shown in:
https://scikit-learn.org/stable/modules/preprocessing.html
Please also refer to the documentation for alternative solver options:
https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression
extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG,
finished (0:00:06)
不知道怎么解决。
另外,不知道后面那个标记基因的表是怎么得来的,用什么代码吗?还有后面的所属细胞是在哪里找到?
期待回复,感谢!
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