无法使用pip安装mpi4py
无法使用pip安装mpi4py
提问于 2022-06-19 20:54:57
我已经创建了一个conda环境，我正在尝试使用pip安装mpi4py。当我这样做时，我会收到以下错误：
Collecting mpi4py
Using cached mpi4py-3.1.3.tar.gz (2.5 MB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing wheel metadata ... done
Building wheels for collected packages: mpi4py
Building wheel for mpi4py (PEP 517) ... error
ERROR: Command errored out with exit status 1:
command: /home/pavan/miniconda3/envs/codelab/bin/python /home/pavan/miniconda3/envs/codelab/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmppevhrinu
cwd: /tmp/pip-install-gxgbr0vg/mpi4py_2f4b2eeacbc0465493035e6fe3c8dbdd
Complete output (170 lines):
running bdist_wheel
running build
running build_src
running build_py
creating build
creating build/lib.linux-x86_64-cpython-39
creating build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/bench.py -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/__main__.py -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/run.py -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/__init__.py -> build/lib.linux-x86_64-cpython-39/mpi4py
creating build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/_base.py -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/pool.py -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/server.py -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/aplus.py -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/_lib.py -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/__main__.py -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/__init__.py -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/_core.py -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
creating build/lib.linux-x86_64-cpython-39/mpi4py/util
copying src/mpi4py/util/pkl5.py -> build/lib.linux-x86_64-cpython-39/mpi4py/util
copying src/mpi4py/util/dtlib.py -> build/lib.linux-x86_64-cpython-39/mpi4py/util
copying src/mpi4py/util/__init__.py -> build/lib.linux-x86_64-cpython-39/mpi4py/util
copying src/mpi4py/py.typed -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/dl.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/__main__.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/run.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/__init__.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/MPI.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/bench.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/__init__.pxd -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/MPI.pxd -> build/lib.linux-x86_64-cpython-39/mpi4py
copying src/mpi4py/libmpi.pxd -> build/lib.linux-x86_64-cpython-39/mpi4py
creating build/lib.linux-x86_64-cpython-39/mpi4py/include
creating build/lib.linux-x86_64-cpython-39/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-x86_64-cpython-39/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-x86_64-cpython-39/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-x86_64-cpython-39/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-x86_64-cpython-39/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-x86_64-cpython-39/mpi4py/include/mpi4py
copying src/mpi4py/futures/__main__.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/server.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/__init__.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/_core.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/aplus.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/_lib.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/futures/pool.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/futures
copying src/mpi4py/util/dtlib.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/util
copying src/mpi4py/util/__init__.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/util
copying src/mpi4py/util/pkl5.pyi -> build/lib.linux-x86_64-cpython-39/mpi4py/util
running build_clib
MPI configuration: [mpi] from 'mpi.cfg'
MPI C compiler: /home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc
MPI C++ compiler: /home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicxx
MPI F compiler: /home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpifort
MPI F90 compiler: /home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpif90
MPI F77 compiler: /home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpif77
checking for library 'lmpe' ...
/home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -I/home/pavan/miniconda3/envs/codelab/include -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -fPIC -c _configtest.c -o _configtest.o
/home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat _configtest.o -llmpe -o _configtest
/home/pavan/miniconda3/envs/codelab/compiler_compat/ld: cannot find -llmpe: No such file or directory
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
building 'mpe' dylib library
creating build/temp.linux-x86_64-cpython-39
creating build/temp.linux-x86_64-cpython-39/src
creating build/temp.linux-x86_64-cpython-39/src/lib-pmpi
/home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -I/home/pavan/miniconda3/envs/codelab/include -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-x86_64-cpython-39/src/lib-pmpi/mpe.o
creating build/lib.linux-x86_64-cpython-39/mpi4py/lib-pmpi
/home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat -shared -Wl,-rpath,/home/pavan/miniconda3/envs/codelab/lib -Wl,-rpath-link,/home/pavan/miniconda3/envs/codelab/lib -L/home/pavan/miniconda3/envs/codelab/lib -L/home/pavan/miniconda3/envs/codelab/lib -Wl,-rpath,/home/pavan/miniconda3/envs/codelab/lib -Wl,-rpath-link,/home/pavan/miniconda3/envs/codelab/lib -L/home/pavan/miniconda3/envs/codelab/lib -Wl,--no-as-needed build/temp.linux-x86_64-cpython-39/src/lib-pmpi/mpe.o -o build/lib.linux-x86_64-cpython-39/mpi4py/lib-pmpi/libmpe.so
checking for library 'vt-mpi' ...
/home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -I/home/pavan/miniconda3/envs/codelab/include -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -fPIC -c _configtest.c -o _configtest.o
/home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat _configtest.o -lvt-mpi -o _configtest
/home/pavan/miniconda3/envs/codelab/compiler_compat/ld: cannot find -lvt-mpi: No such file or directory
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.mpi' ...
/home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -I/home/pavan/miniconda3/envs/codelab/include -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -fPIC -c _configtest.c -o _configtest.o
/home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat _configtest.o -lvt.mpi -o _configtest
/home/pavan/miniconda3/envs/codelab/compiler_compat/ld: cannot find -lvt.mpi: No such file or directory
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
building 'vt' dylib library
/home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -I/home/pavan/miniconda3/envs/codelab/include -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-x86_64-cpython-39/src/lib-pmpi/vt.o
/home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat -shared -Wl,-rpath,/home/pavan/miniconda3/envs/codelab/lib -Wl,-rpath-link,/home/pavan/miniconda3/envs/codelab/lib -L/home/pavan/miniconda3/envs/codelab/lib -L/home/pavan/miniconda3/envs/codelab/lib -Wl,-rpath,/home/pavan/miniconda3/envs/codelab/lib -Wl,-rpath-link,/home/pavan/miniconda3/envs/codelab/lib -L/home/pavan/miniconda3/envs/codelab/lib -Wl,--no-as-needed build/temp.linux-x86_64-cpython-39/src/lib-pmpi/vt.o -o build/lib.linux-x86_64-cpython-39/mpi4py/lib-pmpi/libvt.so
checking for library 'vt-mpi' ...
/home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -I/home/pavan/miniconda3/envs/codelab/include -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -fPIC -c _configtest.c -o _configtest.o
/home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat _configtest.o -lvt-mpi -o _configtest
/home/pavan/miniconda3/envs/codelab/compiler_compat/ld: cannot find -lvt-mpi: No such file or directory
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.mpi' ...
/home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -I/home/pavan/miniconda3/envs/codelab/include -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -fPIC -c _configtest.c -o _configtest.o
/home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat _configtest.o -lvt.mpi -o _configtest
/home/pavan/miniconda3/envs/codelab/compiler_compat/ld: cannot find -lvt.mpi: No such file or directory
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
building 'vt-mpi' dylib library
/home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -I/home/pavan/miniconda3/envs/codelab/include -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-x86_64-cpython-39/src/lib-pmpi/vt-mpi.o
/home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat -shared -Wl,-rpath,/home/pavan/miniconda3/envs/codelab/lib -Wl,-rpath-link,/home/pavan/miniconda3/envs/codelab/lib -L/home/pavan/miniconda3/envs/codelab/lib -L/home/pavan/miniconda3/envs/codelab/lib -Wl,-rpath,/home/pavan/miniconda3/envs/codelab/lib -Wl,-rpath-link,/home/pavan/miniconda3/envs/codelab/lib -L/home/pavan/miniconda3/envs/codelab/lib -Wl,--no-as-needed build/temp.linux-x86_64-cpython-39/src/lib-pmpi/vt-mpi.o -o build/lib.linux-x86_64-cpython-39/mpi4py/lib-pmpi/libvt-mpi.so
checking for library 'vt-hyb' ...
/home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -I/home/pavan/miniconda3/envs/codelab/include -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -fPIC -c _configtest.c -o _configtest.o
/home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat _configtest.o -lvt-hyb -o _configtest
/home/pavan/miniconda3/envs/codelab/compiler_compat/ld: cannot find -lvt-hyb: No such file or directory
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.ompi' ...
/home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -I/home/pavan/miniconda3/envs/codelab/include -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -fPIC -c _configtest.c -o _configtest.o
/home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat _configtest.o -lvt.ompi -o _configtest
/home/pavan/miniconda3/envs/codelab/compiler_compat/ld: cannot find -lvt.ompi: No such file or directory
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
building 'vt-hyb' dylib library
/home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -I/home/pavan/miniconda3/envs/codelab/include -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-x86_64-cpython-39/src/lib-pmpi/vt-hyb.o
/home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat -shared -Wl,-rpath,/home/pavan/miniconda3/envs/codelab/lib -Wl,-rpath-link,/home/pavan/miniconda3/envs/codelab/lib -L/home/pavan/miniconda3/envs/codelab/lib -L/home/pavan/miniconda3/envs/codelab/lib -Wl,-rpath,/home/pavan/miniconda3/envs/codelab/lib -Wl,-rpath-link,/home/pavan/miniconda3/envs/codelab/lib -L/home/pavan/miniconda3/envs/codelab/lib -Wl,--no-as-needed build/temp.linux-x86_64-cpython-39/src/lib-pmpi/vt-hyb.o -o build/lib.linux-x86_64-cpython-39/mpi4py/lib-pmpi/libvt-hyb.so
running build_ext
MPI configuration: [mpi] from 'mpi.cfg'
MPI C compiler: /home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc
MPI C++ compiler: /home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicxx
MPI F compiler: /home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpifort
MPI F90 compiler: /home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpif90
MPI F77 compiler: /home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpif77
checking for dlopen() availability ...
checking for header 'dlfcn.h' ...
gcc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -I/home/pavan/miniconda3/envs/codelab/include -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -fPIC -I/home/pavan/miniconda3/envs/codelab/include/python3.9 -c _configtest.c -o _configtest.o
success!
removing: _configtest.c _configtest.o
success!
checking for library 'dl' ...
gcc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -I/home/pavan/miniconda3/envs/codelab/include -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -fPIC -I/home/pavan/miniconda3/envs/codelab/include/python3.9 -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat _configtest.o -Lbuild/temp.linux-x86_64-cpython-39 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
checking for function 'dlopen' ...
gcc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -I/home/pavan/miniconda3/envs/codelab/include -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -fPIC -I/home/pavan/miniconda3/envs/codelab/include/python3.9 -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat _configtest.o -Lbuild/temp.linux-x86_64-cpython-39 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
building 'mpi4py.dl' extension
gcc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -I/home/pavan/miniconda3/envs/codelab/include -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/home/pavan/miniconda3/envs/codelab/include/python3.9 -c src/dynload.c -o build/temp.linux-x86_64-cpython-39/src/dynload.o
gcc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat -shared -Wl,-rpath,/home/pavan/miniconda3/envs/codelab/lib -Wl,-rpath-link,/home/pavan/miniconda3/envs/codelab/lib -L/home/pavan/miniconda3/envs/codelab/lib -L/home/pavan/miniconda3/envs/codelab/lib -Wl,-rpath,/home/pavan/miniconda3/envs/codelab/lib -Wl,-rpath-link,/home/pavan/miniconda3/envs/codelab/lib -L/home/pavan/miniconda3/envs/codelab/lib build/temp.linux-x86_64-cpython-39/src/dynload.o -Lbuild/temp.linux-x86_64-cpython-39 -ldl -o build/lib.linux-x86_64-cpython-39/mpi4py/dl.cpython-39-x86_64-linux-gnu.so
checking for MPI compile and link ...
/home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -I/home/pavan/miniconda3/envs/codelab/include -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -fPIC -I/home/pavan/miniconda3/envs/codelab/include/python3.9 -c _configtest.c -o _configtest.o
success!
removing: _configtest.c _configtest.o
/home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -I/home/pavan/miniconda3/envs/codelab/include -fPIC -O2 -isystem /home/pavan/miniconda3/envs/codelab/include -fPIC -I/home/pavan/miniconda3/envs/codelab/include/python3.9 -c _configtest.c -o _configtest.o
/home/pavan/packages/openmpi-4.0.7/opt-gfortran/bin/mpicc -pthread -B /home/pavan/miniconda3/envs/codelab/compiler_compat _configtest.o -Lbuild/temp.linux-x86_64-cpython-39 -o _configtest
/home/pavan/miniconda3/envs/codelab/compiler_compat/ld: warning: libm.so.6, needed by /home/pavan/packages/openmpi-4.0.7/opt-gfortran/lib/libmpi.so, not found (try using -rpath or -rpath-link)
/home/pavan/miniconda3/envs/codelab/compiler_compat/ld: warning: libz.so.1, needed by /home/pavan/packages/openmpi-4.0.7/opt-gfortran/lib/libopen-rte.so.40, not found (try using -rpath or -rpath-link)
/home/pavan/miniconda3/envs/codelab/compiler_compat/ld: /home/pavan/packages/openmpi-4.0.7/opt-gfortran/lib/libopen-rte.so.40: undefined reference to `inflate'
/home/pavan/miniconda3/envs/codelab/compiler_compat/ld: /home/pavan/packages/openmpi-4.0.7/opt-gfortran/lib/libmpi.so: undefined reference to `log@GLIBC_2.29'
/home/pavan/miniconda3/envs/codelab/compiler_compat/ld: /home/pavan/packages/openmpi-4.0.7/opt-gfortran/lib/libmpi.so: undefined reference to `sqrt@GLIBC_2.2.5'
/home/pavan/miniconda3/envs/codelab/compiler_compat/ld: /home/pavan/packages/openmpi-4.0.7/opt-gfortran/lib/libopen-rte.so.40: undefined reference to `deflate'
/home/pavan/miniconda3/envs/codelab/compiler_compat/ld: /home/pavan/packages/openmpi-4.0.7/opt-gfortran/lib/libopen-rte.so.40: undefined reference to `deflateInit_'
/home/pavan/miniconda3/envs/codelab/compiler_compat/ld: /home/pavan/packages/openmpi-4.0.7/opt-gfortran/lib/libopen-rte.so.40: undefined reference to `inflateEnd'
/home/pavan/miniconda3/envs/codelab/compiler_compat/ld: /home/pavan/packages/openmpi-4.0.7/opt-gfortran/lib/libopen-rte.so.40: undefined reference to `deflateEnd'
/home/pavan/miniconda3/envs/codelab/compiler_compat/ld: /home/pavan/packages/openmpi-4.0.7/opt-gfortran/lib/libopen-rte.so.40: undefined reference to `deflateBound@ZLIB_1.2.0'
/home/pavan/miniconda3/envs/codelab/compiler_compat/ld: /home/pavan/packages/openmpi-4.0.7/opt-gfortran/lib/libopen-rte.so.40: undefined reference to `inflateInit_'
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
error: Cannot link MPI programs. Check your configuration!!!
----------------------------------------
ERROR: Failed building wheel for mpi4py
Failed to build mpi4py
ERROR: Could not build wheels for mpi4py which use PEP 517 and cannot be installed directly正如在错误的最后一部分中提到的，我试图找到libm.so.6和libz.so.1是否存在或没有使用find。我发现libm.so.6不在那里，但是libz.so.1在那里，它仍然说它没有找到它。任何帮助，以调试这将是非常感谢。以下细节可能是有用的：
- Ubuntu: 22.04
- OpenMPI: 4.0.7
- Python: 3.9.12
- Pip: 21.2.4
H 110车轮:0.37.1H 211F 212
回答 2
Stack Overflow用户
发布于 2022-08-18 07:44:36
它与conda提供的python有关。
标志“/home/pavan/miniconda3/envs/codelab/compiler_compat”-B将要求编者从这条道路上拿起ld。但是，当您使用不同的编译器工具链时，conda提供的ld会引起一些问题。
修复它的步骤：
cd /home/pavan/miniconda3/envs/codelab/compiler_compat
rm -f ld
ln -s /usr/bin/ld ld并再次尝试构建mpi4py。
在此之后，撤销该更改：
cd /home/pavan/miniconda3/envs/codelab/compiler_compat
rm -f ld
ln -s ../bin/x86_64-conda-linux-gnu-ldStack Overflow用户
发布于 2022-09-07 02:00:21
这个错误只发生在Python3.9上，但是在Python3.8中运行得很好。上面建议的临时删除conda的修复对我有用，但不确定为什么它只发生在Python3.9中，以及是否有其他的修复。
页面原文内容由Stack Overflow提供。腾讯云小微IT领域专用引擎提供翻译支持
原文链接：
https://stackoverflow.com/questions/72680287
复制相关文章
相似问题
腾讯云开发者
