每日摘要:进化树可视化与注释R包ggtree

十月

26

这是郝事之秋陪你的第517天!

Hope everybody can study well and make progress every day!

Two methods for mapping and visualizing associated data on phylogeny usingggtree

First author:Guangchuang Yu;Affiliations: Southern Medical University(南方医科大学):Guangzhou, China

Corresponding author:Guangchuang Yu

Ggtreeis a comprehensiveRpackage for visualizing and annotating phylogenetic trees with associated data. It can also map and visualize associated external data on phylogenies with two general methods. Method 1 allows external data to be mapped on the tree structure and used as visual characteristic in tree and data visualization. Method 2 plots the data with the tree side by side using different geometric functions after re-ordering the data based on the tree structure. These two methods integrate data with phylogeny for further exploration and comparison in the evolutionary biology context.Ggtreeis available from http://www.bioconductor.org/packages/ggtree.

Y叔开发的R包ggtree,适用于利用相关数据可视化及注释进化树。

废话不多说,请赏图

个人简介:2005年,华南农业大学,生物技术学士;2009年,安徽医科大学,生物化学与分子生物学硕士;2017年,香港大学,分子进化博士。

研究方向:生物信息学、宏基因组学、分子进化、数据可视化(偏爱开发R包)。

doi: https://doi.org/10.1093/molbev/msy194

Journal:Molecular Biology and Evolution

Published date: 23 October, 2018

  • 发表于:
  • 原文链接:https://kuaibao.qq.com/s/20181026G00EET00?refer=cp_1026
  • 腾讯「云+社区」是腾讯内容开放平台帐号(企鹅号)传播渠道之一,根据《腾讯内容开放平台服务协议》转载发布内容。

扫码关注云+社区

领取腾讯云代金券