每日摘要：进化树可视化与注释R包ggtree

十月

26

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Two methods for mapping and visualizing associated data on phylogeny usingggtree

First author:Guangchuang Yu;Affiliations: Southern Medical University(南方医科大学):Guangzhou, China

Corresponding author:Guangchuang Yu

Ggtreeis a comprehensiveRpackage for visualizing and annotating phylogenetic trees with associated data. It can also map and visualize associated external data on phylogenies with two general methods. Method 1 allows external data to be mapped on the tree structure and used as visual characteristic in tree and data visualization. Method 2 plots the data with the tree side by side using different geometric functions after re-ordering the data based on the tree structure. These two methods integrate data with phylogeny for further exploration and comparison in the evolutionary biology context.Ggtreeis available from http://www.bioconductor.org/packages/ggtree.

Y叔开发的R包ggtree，适用于利用相关数据可视化及注释进化树。

废话不多说，请赏图

个人简介：2005年，华南农业大学，生物技术学士；2009年，安徽医科大学，生物化学与分子生物学硕士；2017年，中国香港大学，分子进化博士。

研究方向：生物信息学、宏基因组学、分子进化、数据可视化（偏爱开发R包）。

doi: https://doi.org/10.1093/molbev/msy194

Journal:Molecular Biology and Evolution

Published date: 23 October, 2018