无法在Windows4.2.1R中安装monocle3
无法在Windows4.2.1R中安装monocle3
提问于 2022-10-20 19:40:26
尝试下载monocle3：https://cole-trapnell-lab.github.io/monocle3/docs/installation/
接收错误：
Installing package into ‘C:/Users/drnan/AppData/Local/R/win-library/4.2’
(as ‘lib’ is unspecified)
ERROR: dependency 'Matrix.utils' is not available for package 'monocle3'
* removing 'C:/Users/drnan/AppData/Local/R/win-library/4.2/monocle3'
installation of package ‘C:/Users/drnan/AppData/Local/Temp/RtmpEl0M3e/file17d832b82f61/monocle3_1.2.9.tar.gz’有非零退出状态。
我还收到了一个行错误: BiocManager::install(version = "3.14")
Error: Bioconductor version '3.14' requires R version '4.1'; use `BiocManager::install(version = '3.15')` with R version 4.2; see https://bioconductor.org/install
With version 3.15, however Matrix.utils wouldn't install:
BiocManager::install(c('BiocGenerics', 'DelayedArray', 'DelayedMatrixStats',
'limma', 'lme4', 'S4Vectors', 'SingleCellExperiment',
'SummarizedExperiment', 'batchelor', 'Matrix.utils',
'HDF5Array', 'terra', 'ggrastr'))
Warning messages:
1: package(s) not installed when version(s) same as current; use `force = TRUE` to re-install: 'BiocGenerics' 'DelayedArray' 'DelayedMatrixStats' 'limma' 'lme4'
'S4Vectors' 'SingleCellExperiment' 'SummarizedExperiment' 'batchelor' 'HDF5Array' 'terra' 'ggrastr'
2: packages ‘TRUE’, ‘Matrix.utils’ are not available for Bioconductor version '3.15'所以我的问题是，与R4.2.1兼容的BIoconductor，Monocle3的正确版本是什么？我甚至不需要生物技术，只需要Monocle3。完全封锁了！救命！
回答 1
Stack Overflow用户
回答已采纳
发布于 2022-10-26 03:05:45
我刚在本地电脑上解决了这个问题。因此，安装失败的全部原因是因为Matrix.utils不可用(在cran https://cran.r-project.org/web/packages/Matrix.utils/index.html中甚至有通知说它被删除了，因为“尽管有提醒但问题没有得到纠正”)。
mac os x的解决方案：
https://cran.r-project.org/src/contrib/Archive/Matrix.utils/)
- install
- 从https://cran.r-project.org/bin/macosx/el-capitan/contrib/3.5/Matrix.utils_0.9.8.tgz下载Matrix.utils_0.9.8.tgz (请查找windows可选选项，也许是在使用
library(monocle3)
的install.packages("locationfolder/Matrix.utils_0.9.8.tgz", repos = NULL, type="source")
- rerun
devtools::install_github('cole-trapnell-lab/monocle3')
- test中找到的)
希望这能有所帮助！
页面原文内容由Stack Overflow提供。腾讯云小微IT领域专用引擎提供翻译支持
原文链接：
https://stackoverflow.com/questions/74145500
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