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社区首页 >问答首页 >大家好，我正在安装gromacs 5.1.4

问大家好，我正在安装gromacs 5.1.4
EN

Ask Ubuntu用户
提问于 2020-03-02 07:50:04
回答 2查看 349关注 0票数 -1

我是Ubuntu中的一个新用户，我试图在其中安装gromacs 5.1.4，但是在安装的最后几个步骤中，我遇到了一个错误，提到网络是不可访问的。我还在这里添加了代码，以防它有用。

代码语言：javascript
复制
cmake .. -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=ON
-- No compatible CUDA toolkit found (v4.0+), disabling native GPU acceleration
-- The GROMACS-managed build of FFTW 3 will configure with the following optimizations: --enable-sse2;--enable-avx
Downloading: http://gerrit.gromacs.org/download/regressiontests-5.1.4.tar.gz
-- [download 0% complete]
-- [download 100% complete]
CMake Error at tests/CMakeLists.txt:57 (message):
error: downloading
'http://gerrit.gromacs.org/download/regressiontests-5.1.4.tar.gz' failed

status_code: 7
status_string: "Couldn't connect to server"
log: Trying 127.0.0.1...
Connected to 127.0.0.1 (127.0.0.1) port 41173 (#0)
GET http://gerrit.gromacs.org/download/regressiontests-5.1.4.tar.gz
HTTP/1.1
Host: gerrit.gromacs.org
User-Agent: curl/7.47.0
Accept: */*
Proxy-Connection: Keep-Alive

HTTP/1.1 302 Found
Content-Length: 334
Content-Type: text/html; charset=iso-8859-1
Date: Mon, 02 Mar 2020 06:53:35 GMT
Keep-Alive: timeout=58
Location:
ftp://ftp.gromacs.org/regressiontests/regressiontests-5.1.4.tar.gz
Server: Apache/2.4.18 (Ubuntu)


Ignoring the response-body
[334 bytes data]
Connection #0 to host 127.0.0.1 left intact
Issue another request to this URL:
'ftp://ftp.gromacs.org/regressiontests/regressiontests-5.1.4.tar.gz'
    Trying 130.237.25.126...
    Trying 2001:6b0:1:1190:5054:ff:fe2f:daed...
Immediate connect fail for 2001:6b0:1:1190:5054:ff:fe2f:daed: Network is unreachable
    Trying 2001:6b0:1:1190:5054:ff:fe2f:daed...
Immediate connect fail for 2001:6b0:1:1190:5054:ff:fe2f:daed: Network is unreachable
    Trying 2001:6b0:1:1190:5054:ff:fe2f:daed...
Immediate connect fail for 2001:6b0:1:1190:5054:ff:fe2f:daed: Network is unreachable
    Trying 2001:6b0:1:1190:5054:ff:fe2f:daed...
Immediate connect fail for 2001:6b0:1:1190:5054:ff:fe2f:daed: Network is unreachable
    Trying 2001:6b0:1:1190:5054:ff:fe2f:daed...
Immediate connect fail for 2001:6b0:1:1190:5054:ff:fe2f:daed: Network is unreachable
    Trying 2001:6b0:1:1190:5054:ff:fe2f:daed...
Immediate connect fail for 2001:6b0:1:1190:5054:ff:fe2f:daed: Network is unreachable
    Trying 2001:6b0:1:1190:5054:ff:fe2f:daed...
Immediate connect fail for 2001:6b0:1:1190:5054:ff:fe2f:daed: Network is unreachable
    Trying 2001:6b0:1:1190:5054:ff:fe2f:daed...
Immediate connect fail for 2001:6b0:1:1190:5054:ff:fe2f:daed: Network is unreachable
    Trying 2001:6b0:1:1190:5054:ff:fe2f:daed...
Immediate connect fail for 2001:6b0:1:1190:5054:ff:fe2f:daed: Network is unreachable
    Trying 2001:6b0:1:1190:5054:ff:fe2f:daed...
Immediate connect fail for 2001:6b0:1:1190:5054:ff:fe2f:daed: Network is unreachable
    Trying 2001:6b0:1:1190:5054:ff:fe2f:daed...
Immediate connect fail for 2001:6b0:1:1190:5054:ff:fe2f:daed: Network is unreachable
    Trying 2001:6b0:1:1190:5054:ff:fe2f:daed...
Immediate connect fail for 2001:6b0:1:1190:5054:ff:fe2f:daed: Network is unreachable
    Trying 2001:6b0:1:1190:5054:ff:fe2f:daed...
Immediate connect fail for 2001:6b0:1:1190:5054:ff:fe2f:daed: Network is unreachable
    Trying 2001:6b0:1:1190:5054:ff:fe2f:daed...
Immediate connect fail for 2001:6b0:1:1190:5054:ff:fe2f:daed: Network is unreachable
    Trying 2001:6b0:1:1190:5054:ff:fe2f:daed...
Immediate connect fail for 2001:6b0:1:1190:5054:ff:fe2f:daed: Network is unreachable
    Trying 2001:6b0:1:1190:5054:ff:fe2f:daed...
Immediate connect fail for 2001:6b0:1:1190:5054:ff:fe2f:daed: Network is unreachable
    Trying 2001:6b0:1:1190:5054:ff:fe2f:daed...
Immediate connect fail for 2001:6b0:1:1190:5054:ff:fe2f:daed: Network is unreachable
    Trying 2001:6b0:1:1190:5054:ff:fe2f:daed...
Immediate connect fail for 2001:6b0:1:1190:5054:ff:fe2f:daed: Network is unreachable
    Trying 2001:6b0:1:1190:5054:ff:fe2f:daed...
Immediate connect fail for 2001:6b0:1:1190:5054:ff:fe2f:daed: Network is unreachable
    Trying 2001:6b0:1:1190:5054:ff:fe2f:daed...
Immediate connect fail for 2001:6b0:1:1190:5054:ff:fe2f:daed: Network is unreachable
    Trying 2001:6b0:1:1190:5054:ff:fe2f:daed...
Immediate connect fail for 2001:6b0:1:1190:5054:ff:fe2f:daed: Network is unreachable
connect to 130.237.25.126 port 21 failed: Connection refused
    Trying 2001:6b0:1:1190:5054:ff:fe2f:daed...
Immediate connect fail for 2001:6b0:1:1190:5054:ff:fe2f:daed: Network is unreachable
    Trying 2001:6b0:1:1190:5054:ff:fe2f:daed...
Immediate connect fail for 2001:6b0:1:1190:5054:ff:fe2f:daed: Network is unreachable
Failed to connect to ftp.gromacs.org port 21: Connection refused

Closing connection 1

-- Configuring incomplete, errors occurred!
See also "/home/mahsheed/Downloads/gromacs-5.1.4/build/CMakeFiles/CMakeOutput.log".
See also "/home/mahsheed/Downloads/gromacs-5.1.4/build/CMakeFiles/CMakeError.log
software-installation
EN

回答 2

Ask Ubuntu用户

发布于 2020-03-02 07:56:32

从服务器到ftp.gromacs.org的网络连接看起来是个问题。你能跳到这个位置吗？

代码语言：javascript
复制
ping ftp.gromacs.org

如果是，您能看到wget是否正在获取此文件吗？

代码语言：javascript
复制
wget ftp://ftp.gromacs.org/regressiontests/regressiontests-5.1.4.tar.gz

您还可以尝试将一个条目添加到/etc/ can文件的顶部，然后再试一次。

代码语言：javascript
复制
nameserver 8.8.8.8

如果所有这些都不起作用的话，我想是有防火墙阻塞了连接。

票数 0
EN

Ask Ubuntu用户

发布于 2021-08-09 08:00:16

我也有问题，通过wget下载。所以我用浏览器下载了这些包。

它暂时解决了我的问题。

票数 0
EN
页面原文内容由Ask Ubuntu提供。腾讯云小微IT领域专用引擎提供翻译支持
原文链接：

https://askubuntu.com/questions/1214213

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