用脚本同时对多个fq文件进行数据质量检测

lihan@lihan-virtual-machine:~/seqs/trim_out$ nano fastqc.sh

#!/bin/sh 
for i in output* 
do 
echo $i 
fastqc $i 
done

lihan@lihan-virtual-machine:~/seqs/trim_out$ sh fastqc.sh

output_forward_paired.fq.gz
Started analysis of output_forward_paired.fq.gz
Approx 5% complete for output_forward_paired.fq.gz
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Analysis complete for output_forward_paired.fq.gz
output_forward_unpaired.fq.gz
Started analysis of output_forward_unpaired.fq.gz
Approx 20% complete for output_forward_unpaired.fq.gz
Approx 40% complete for output_forward_unpaired.fq.gz
Approx 60% complete for output_forward_unpaired.fq.gz
Approx 80% complete for output_forward_unpaired.fq.gz
Analysis complete for output_forward_unpaired.fq.gz
output_reverse_paired.fq.gz
Started analysis of output_reverse_paired.fq.gz
Approx 5% complete for output_reverse_paired.fq.gz
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Approx 90% complete for output_reverse_paired.fq.gz
Approx 95% complete for output_reverse_paired.fq.gz
Analysis complete for output_reverse_paired.fq.gz
output_reverse_unpaired.fq.gz
Started analysis of output_reverse_unpaired.fq.gz
Analysis complete for output_reverse_unpaired.fq.gz

lihan@lihan-virtual-machine:~/seqs/trim_out$ ls
fastqc.sh                            output_reverse_paired_fastqc.html
output_forward_paired_fastqc.html    output_reverse_paired_fastqc.zip
output_forward_paired_fastqc.zip     output_reverse_paired.fq.gz
output_forward_paired.fq.gz          output_reverse_unpaired_fastqc.html
output_forward_unpaired_fastqc.html  output_reverse_unpaired_fastqc.zip
output_forward_unpaired_fastqc.zip   output_reverse_unpaired.fq.gz
output_forward_unpaired.fq.gz