关键词:HLA; typing; NGS;
本文整理搜集了用于HLA typing的软件,供大家参考。
先贴一张比较全的表格:
表格来源:https://www.nature.com/articles/jhg2015102/tables/2
表格中未列出的HLA-typing软件还包括:
SOAP-HLA: http://soap.genomics.org.cn/SOAP-HLA.html
Erlich et al: https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-12-42
Lange et al: https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-15-63
Dilthey et al: https://www.biorxiv.org/content/early/2014/07/08/006973
GATK HLA Caller: https://gatkforums.broadinstitute.org/gatk/discussion/65/hla-caller
如果有新的软件欢迎告知!