= ['Sample1', 'Sample2'] rule all: input: expand('{sample}.txt', sample=SAMPLES) rule quantify_genes..., 里面有input, output, shell, 其中{sample}是用的rule all里面的name rule quantify_genes: input:...Job counts: count jobs 1 all 2 quantify_genes 3 [Tue Apr 2 13:49:34 2019]...rule quantify_genes: input: genome.fa, fastq/Sample1.R1.fastq.gz, fastq/Sample1.R2.fastq.gz output...fastq/Sample1.R1.fastq.gz fastq/Sample1.R2.fastq.gz > Sample1.txt [Tue Apr 2 13:49:34 2019] rule quantify_genes
k-peripheral-blood-mononuclear-cells-pbm-cs-from-a-healthy-donor-next-gem-v-1-1-1-1-standard-2-0-0 cd ~/Project/ATAC mkdir fastqs quantify...cell-atac/refdata-cellranger-arc-mm10-2020-A-2.0.0.tar.gz md5sum *gz tar -xf *gz rm -f *gz count #>>>quantify.sh...refdata-cellranger-arc-mm10-2020-A-2.0.0 fastqs_dir=~/Project/ATAC/fastqs output_dir=~/Project/ATAC/quantify...\ --fastqs ${fastqs_dir} \ --sample $i \ --localcores 12 \ --localmem 128 done #<<<quantify.sh...<<< nohup bash quantify.sh &> quantify.sh.log & out 输出文件怎么看，可以参考这两个推文。
七、chi-square GOF test evaluating the hypotheses ‣ quantify how different the observedcounts are from...higher deviation from the nullhypothesis 八、chi-square independence test evaluating the hypotheses ‣ quantify
of new statistical methods and machine learning techniques for efficiently examining the extremes; Quantify...heat waves); Statistical models and machine learning technology for processing compounding extremes; Quantify
cd ~/Project/SC10X/rawdata/mv GSM3516662* fastqsmv GSM3516663* fastqs#>>>quantify.shfastqs_dir=~/Project...index_dir} \ --fastqs ${fastqs_dir} \ --sample $i \ --localcores 12 \ --localmem 128done# quantify.sh.log &RuntimeError: ~/Project/SC10X/GSM3516662 is not a pipestance directoryGSM3516662
Y35L_S1_L004_R1_001.fastq.gz mv HRR208791_r2.fastq.gz Y35L_S1_L004_R2_001.fastq.gz cellranger count #>>>quantify.sh...Project/HM/fastqs index_dir=~/DataHub/Genomics/10X/refdata-gex-GRCh38-2020-A output_dir=~/Project/HM/quantify...\ --fastqs ${fastqs_dir} \ --sample $i \ --localcores 12 \ --localmem 128 done # quantify.sh.log & 输出文件 可以参考生信技能树https://mp.weixin.qq.com/s/VWUmJZnzT7m_7QDjxkbrJw
profile)、图像线灰度均值(linear averages)ROl边界灰度曲线、图像形心(centroid，又称几何中心)和图像质心(central of mass)、灰度定量描述(grayscale quantify...Nl Vision中IMAQ Quantify 2可返回图像或其中某一区域的定量描述参数，包括：像素灰度均值、标准差、最大值、最小值以及通过像素数量或用户自定义单位（校准坐标及单位）表示的图像区域面积。...若要使用IMAQ Quantify2计算图像中某个或多个区域的灰度数据，必须使用标记过的遮罩图像（Labeled lmage Mask）来说明各个区域，每个区域均使用一个数字标记。...使用IMAQ Quantify2计算时，若已由标记过的遮罩图像在图像中指定了多个区域，则IMAQ Quantify2不仅会通过Global Report簇返回整个图像的灰度定量描述数据，还会通过Region...观察程序运行结果可发现，IMAQ Quantify2和IMAQ Histogram均可计算得到某些相同的灰度数据，但前者需要以标记过的遮罩图像作为输入。
我们的目标是 characterize and quantify crowd 中的 groups ，对其行为进行分析，人群场景的理解。...这里使用图论里的 graph cut , We quantify uniformity by inferring the optimal number (c ∗ ) of graph cuts on the
Quantify the probability and business impact of these potential threats.
https://github.com/deepmind/neural_testbed Introduction Posterior predictive distributions quantify
Probability quantify uncertainty, degree of belief, degrees of tru[th. decision theory, probability theory
We needed to investigate and quantify the benefits that could be directly applied to keyword spotting...extensive ecosystem, which enabled Sensory to conduct investigations in an efficient way and enabled us to quantify
one that, with a few exceptions, gets a lot less press I think than bias because it’s a lot harder to quantify...The benefits brought about by continuing to include people in these processes are harder to quantify
FLAIR软件一共六个大模块（modules），flair align，flair correct，flair collapse，flair quantify，flair diffExp和flair diiffSplice...flair quantify：对所有样本中的isoforms进行表达定量，生成表达矩阵。flair diffExp：在指定分组的情况下，对组间进行差异表达分析。...You can supply an output directory (e.g. output/flair_quantify). #指定输出文件前缀和路径。...选项：必要选项--counts_matrix Tab-delimited isoform count matrix from flair quantify #flair定量表达矩阵。...--counts_matrix Tab-delimited isoform count matrix from Flair quantify.
Quantify your coding 系统会自动默认会每周发送一周的统计报表到邮箱，使用中。。。
effects不明显 都和LTED做了比较 b CD44 high cells的heterogeneity比CD44 low cells的高（用average euclidean distance进行quantify...AUCell39 (R package v1.0.0) was the used to quantify the activity of the pre-adapted signatures (and...Cells在短期ED的过程中逐渐显示更高的PA signature(以及其中一些marker gene)表达，但没有LTED signature表达(用AUCell进行quantify)；这说明LTED
Volt Tackle and Sacred Fire, from the Sea, the author set out to quantify this supposed damage bonus
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