Gene RearrangementAnalySiS http://cancerit.github.io/grass/
Detect gene fusion directly from raw fastq files
Prioritize structural variants based on CADD scores
GeneRearrangement AnalySiS http://cancerit.github.io/grass/
Breakpoints via assembly - Identifies breaks andattempts to assemble rearrangements.
FACTERA is atool for practical and robust de novo enumeration of genomic fusions andbreakpoints from paired-end targeted (or genome-wide) sequencing data. FACTERAhas minimal external dependencies, works directly on a preexisting BAMalignment file, and produces easily interpretable output.
A method to identify structural variation from sequencing data in target regions